A User-Centric Framework for Accessing Biological Sources and Tools

Biologists face two problems in interpreting their experiments: the integration of their data with information from multiple heterogeneous sources and data analysis with bioinformatics tools. It is difficult for scientists to choose between the numerous sources and tools without assistance. Following a thorough analysis of scientists’ needs during the querying process, we found that biologists express preferences concerning the sources to be queried and the tools to be used. Interviews also showed that the querying process itself – the strategy followed – differs between scientists. In response to these findings, we have introduced a user-centric framework allowing to specify various querying processes. Then we have developed the BioGuide system which helps the scientists to choose suitable sources and tools, find complementary information in sources, and deal with divergent data. It is generic in that it can be adapted by each user to provide answers respecting his/her preferences, and obtained following his/her strategies. Comments Postprint version. Published in Lecture Notes in Computer Science, Volume 3615, Data Integration in the Life Sciences (DILS), 2005, pages 3-18. Publisher URL: http://dx.doi.org/10.1007/11530084_3 This conference paper is available at ScholarlyCommons: http://repository.upenn.edu/cis_papers/228 A User-centric Framework for Accessing Biological Sources and Tools Sarah Cohen-Boulakia, Susan Davidson and Christine Froidevaux 1 LRI, CNRS UMR 8023, Université Paris-Sud, Orsay, France cohen,[email protected] 2 Department of Computer and Information Science University of Pennsylvania, USA